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Structure factors have been supplied for datablock(s) KL_05_019_rerun

THIS REPORT IS FOR GUIDANCE ONLY. IF USED AS PART OF A REVIEW PROCEDURE FOR PUBLICATION, IT SHOULD NOT REPLACE THE EXPERTISE OF AN EXPERIENCED CRYSTALLOGRAPHIC REFEREE.
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Structure factor report

Datablock: KL_05_019_rerun
Bond precision: C-C = 0.0162 A Wavelength=0.71073
Cell: a=31.881(2) b=31.881(2) c=76.173(6)
alpha=90 beta=90 gamma=120
Temperature: 100 K
Calculated Reported
Volume 67050(10) 67048(10)
Space group R -3 c R -3 c :H
Hall group -R 3 2"c -R 3 2"c
Moiety formula C234 H144 Cu12 N24 O96, 3(C16 H11 N) [+ solvent] C234 H144 Cu12 N24 O96, 3(C16 H11 N)
Sum formula C282 H177 Cu12 N27 O96 [+ solvent] C282 H177 Cu12 N27 O96
Mr 6242.11 6241.98
Dx,g cm-3 0.928 0.928
Z 6 6
Mu (mm-1) 0.619 0.619
F000 19044.0 19044.0
F000' 19076.34
h,k,lmax 37,37,88 37,37,88
Nref 12281 12270
Tmin,Tmax 0.927,0.952 0.582,0.745
Tmin' 0.927
Correction method= # Reported T Limits: Tmin=0.582 Tmax=0.745 AbsCorr = MULTI-SCAN
Data completeness= 0.999 Theta(max)= 24.407
R(reflections)= 0.1471( 6317) wR2(reflections)= 0.3479( 12270)
S = 1.281 Npar= 633

The following ALERTS were generated. Each ALERT has the format
       test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.

Alert level B PLAT341_ALERT_3_B Low Bond Precision on C-C Bonds ............... 0.01618 Ang. PLAT420_ALERT_2_B D-H Bond Without Acceptor O16 --H16A . Please Check PLAT420_ALERT_2_B D-H Bond Without Acceptor O16 --H16B . Please Check
Alert level C RINTA01_ALERT_3_C The value of Rint is greater than 0.12 Rint given 0.145 THETM01_ALERT_3_C The value of sine(theta_max)/wavelength is less than 0.590 Calculated sin(theta_max)/wavelength = 0.5814 PLAT020_ALERT_3_C The Reported Value of Rint is Greater Than 0.12 0.145 Report PLAT023_ALERT_3_C Resolution (too) Low [sin(theta)/Lambda < 0.6].. 0.58 Ang-1 PLAT082_ALERT_2_C High R1 Value .................................. 0.15 Report PLAT084_ALERT_3_C High wR2 Value (i.e. > 0.25) ................... 0.35 Report PLAT220_ALERT_2_C NonSolvent Resd 1 C Ueq(max)/Ueq(min) Range 3.6 Ratio PLAT220_ALERT_2_C NonSolvent Resd 1 O Ueq(max)/Ueq(min) Range 4.6 Ratio PLAT241_ALERT_2_C High MainResAtom Ueq as Compared to Neighbours O15 Check PLAT241_ALERT_2_C High MainResAtom Ueq as Compared to Neighbours C33 Check PLAT242_ALERT_2_C Low MainResAtom Ueq as Compared to Neighbours Cu2 Check
And 2 other PLAT242 Alerts More ...

PLAT242_ALERT_2_C Low MainResAtom Ueq as Compared to Neighbours N2 Check PLAT242_ALERT_2_C Low MainResAtom Ueq as Compared to Neighbours C34 Check

PLAT260_ALERT_2_C Large Average Ueq of Residue Including Cu1 0.115 Check PLAT260_ALERT_2_C Large Average Ueq of Residue Including N4 0.203 Check PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C1 - C2 . 1.55 Ang.
And 3 other PLAT369 Alerts More ...

PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C9 - C10 . 1.56 Ang. PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C17 - C18 . 1.56 Ang. PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C20 - C24 . 1.55 Ang.

PLAT372_ALERT_2_C Short C(sp)-C(sp) Bond C8 - C16 . 1.14 Ang. PLAT420_ALERT_2_C D-H Bond Without Acceptor N4 --H4A . Please Check PLAT420_ALERT_2_C D-H Bond Without Acceptor N4 --H4B . Please Check PLAT905_ALERT_3_C Negative K value in the Analysis of Variance ... -41.001 Report
And 2 other PLAT905 Alerts More ...

PLAT905_ALERT_3_C Negative K value in the Analysis of Variance ... -5.729 Report PLAT905_ALERT_3_C Negative K value in the Analysis of Variance ... -0.608 Report

PLAT911_ALERT_3_C Missing FCF Refl Between Thmin & STh/L= 0.581 9 Report -3 4 2, 0 7 2, -1 9 2, -1 2 3, -1 1 4, -2 2 8, -4 5 9, -7 7 10, -3 4 17, PLAT918_ALERT_3_C Reflection(s) with I(obs) much Smaller I(calc) . 8 Check -3 7 2, -2 8 2, -4 9 2, -2 6 4, -3 7 8, 0 2 10, -6 9 12, -2 3 13, PLAT973_ALERT_2_C Check Calcd Positive Resid. Density on Cu1 1.27 eA-3 PLAT973_ALERT_2_C Check Calcd Positive Resid. Density on Cu2 1.25 eA-3 PLAT975_ALERT_2_C Check Calcd Resid. Dens. 0.72Ang From O1 . 0.68 eA-3 PLAT977_ALERT_2_C Check Negative Difference Density on H39C . -0.44 eA-3 PLAT977_ALERT_2_C Check Negative Difference Density on H51 . -0.40 eA-3
Alert level G PLAT002_ALERT_2_G Number of Distance or Angle Restraints on AtSite 54 Note PLAT003_ALERT_2_G Number of Uiso or U(i,j) Restrained non-H-Atoms 78 Report PLAT007_ALERT_5_G Number of Unrefined Donor-H Atoms .............. 4 Report H16A H16B H4A H4B PLAT083_ALERT_2_G SHELXL Second Parameter in WGHT Unusually Large 2500.00 Why ? PLAT172_ALERT_4_G The CIF-Embedded .res File Contains DFIX Records 1 Report PLAT174_ALERT_4_G The CIF-Embedded .res File Contains FLAT Records 2 Report PLAT175_ALERT_4_G The CIF-Embedded .res File Contains SAME Records 5 Report PLAT176_ALERT_4_G The CIF-Embedded .res File Contains SADI Records 4 Report PLAT177_ALERT_4_G The CIF-Embedded .res File Contains DELU Records 1 Report PLAT178_ALERT_4_G The CIF-Embedded .res File Contains SIMU Records 2 Report PLAT186_ALERT_4_G The CIF-Embedded .res File Contains ISOR Records 1 Report PLAT188_ALERT_3_G A Non-default SIMU Restraint Value has been used 0.0020 Report PLAT188_ALERT_3_G A Non-default SIMU Restraint Value has been used 0.0020 Report PLAT191_ALERT_3_G A Non-default SADI Restraint Value has been used 0.0050 Report PLAT191_ALERT_3_G A Non-default SADI Restraint Value has been used 0.0050 Report PLAT192_ALERT_3_G A Non-default DELU Restraint Value for First Par 0.0005 Report PLAT299_ALERT_4_G Atom Site Occupancy Constrained at ............. 0.5 Check N4 C43 C44 C45 C46 C47 C48 C49 C50 C51 C52 C53 C54 C55 C56 C57 C58 H4A H4B H44 H48 H51 H52 H53 H55 H56 H57 H58 PLAT302_ALERT_4_G Anion/Solvent/Minor-Residue Disorder (Resd 2) 100% Note PLAT371_ALERT_2_G Long C(sp2)-C(sp1) Bond C4 - C8 . 1.51 Ang. PLAT371_ALERT_2_G Long C(sp2)-C(sp1) Bond C12 - C16 . 1.41 Ang. PLAT411_ALERT_2_G Short Inter H...H Contact H21 ..H52 . 1.99 Ang. x,y,z = 1_555 Check PLAT413_ALERT_2_G Short Inter XH3 .. XHn H38C ..H53 . 2.12 Ang. -y,x-y,z = 2_555 Check PLAT432_ALERT_2_G Short Inter X...Y Contact C21 ..C52 . 2.97 Ang. x,y,z = 1_555 Check PLAT606_ALERT_4_G Solvent Accessible VOID(S) in Crystal Structure ! Info PLAT760_ALERT_1_G CIF Contains no Torsion Angles ................. ? Info PLAT789_ALERT_4_G Atoms with Negative _atom_site_disorder_group # 28 Check PLAT790_ALERT_4_G Centre of Gravity not Within Unit-Cell: Resd. # 2 Note C16 H11 N PLAT822_ALERT_4_G CIF-embedded .res Contains Negative PART Numbers 1 Check PLAT860_ALERT_3_G Number of Least-Squares Restraints ............. 738 Note PLAT869_ALERT_4_G ALERTS Related to the Use of SQUEEZE Suppressed ! Info PLAT910_ALERT_3_G Missing FCF Reflection(s) Below Theta(Min)[Deg]= 1.28 Note 0 1 2, PLAT913_ALERT_3_G Missing # of Very Strong Reflections in FCF .... 1 Note -1 1 4, PLAT933_ALERT_2_G Number of HKL-OMIT Records in Embedded .res File 9 Note -2 2 8, 0 7 2, -3 4 17, -4 5 9, -1 2 3, -3 4 2, -1 1 4, -7 7 10, -1 9 2, PLAT969_ALERT_5_G The 'Henn et al.' R-Factor-gap value ........... 9.731 Note Predicted wR2: Based on SigI**2 3.58 or SHELX Weight 27.15 Note PLAT978_ALERT_2_G Number C-C Bonds with Positive Residual Density. 1 Info
0 ALERT level A = Most likely a serious problem - resolve or explain 3 ALERT level B = A potentially serious problem, consider carefully 32 ALERT level C = Check. Ensure it is not caused by an omission or oversight 35 ALERT level G = General information/check it is not something unexpected 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 34 ALERT type 2 Indicator that the structure model may be wrong or deficient 19 ALERT type 3 Indicator that the structure quality may be low 14 ALERT type 4 Improvement, methodology, query or suggestion 2 ALERT type 5 Informative message, check


Publication of your CIF

You should attempt to resolve as many as possible of the alerts in all categories. Often the minor alerts point to easily fixed oversights, errors and omissions in your CIF or refinement strategy, so attention to these fine details can be worthwhile. In order to resolve some of the more serious problems it may be necessary to carry out additional measurements or structure refinements. However, the nature of your study may justify the reported deviations from journal submission requirements and the more serious of these should be commented upon in the discussion or experimental section of a paper or in the "special_details" fields of the CIF. checkCIF was carefully designed to identify outliers and unusual parameters, but every test has its limitations and alerts that are not important in a particular case may appear. Conversely, the absence of alerts does not guarantee there are no aspects of the results needing attention. It is up to the individual to critically assess their own results and, if necessary, seek expert advice.

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PLATON version of 23/04/2026; check.def file version of 30/03/2026
Datablock KL_05_019_rerun - ellipsoid plot

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